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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 32DNase-seq
  • 7ChIP-seq
  • 6ATAC-seq
  • 4Hi-C
  • 3total RNA-seq
  • 1WGBS
Assay category
  • 38DNA accessibility
  • 7DNA binding
  • 43D chromatin structure
  • 3Transcription
  • 1DNA methylation
Target of assay
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 2narrow histone mark
  • 1control
Date released
  • October, 2019
  • 32June, 2019
  • 7May, 2019
  • 6February, 2021
  • 5July, 2019
  • 3February, 2020
Available data
  • 46bam
  • 44bed narrowPeak
  • 39bigWig
  • 38bigBed narrowPeak
  • 32bed bed3+
  • 32bed broadPeak
  • 32bigBed broadPeak
  • 3tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 53Homo sapiens
Biosample type
  • 53tissue
Organ
  • 928pancreas
  • 784liver
  • 680connective tissue
  • 490adipose tissue
  • 489epithelium
  • 385heart
  • 324kidney
  • 200brain
  • 189vasculature
  • 183blood vessel
  • 159bone element
  • 115artery
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 53limb
  • 40eye
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
  • 1vein
Project
  • 53AMP
Genome assembly (visualization)
  • 44GRCh38
  • 44hg19
Lab
  • 53AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

53 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
muscle of leg1371
muscle of arm17
gastrocnemius medialis41
distal epiphysis of femur1
distal epiphysis of humerus1
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