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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
528
ChIP-seq
183
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
528
DNA binding
187
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
83
histone modification
82
histone
82
recombinant protein
56
RNA binding protein
51
narrow histone mark
31
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
31
August, 2021
8
July, 2019
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
649
bam
592
bigWig
450
fastq
417
bed narrowPeak
343
bigBed narrowPeak
168
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
757
Homo sapiens
Biosample type
401
cell line
355
tissue
1
primary cell
Organ
920
pancreas
784
liver
679
connective tissue
489
adipose tissue
epithelium
385
heart
324
kidney
200
brain
189
vasculature
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
19
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
757
AMP
Genome assembly (visualization)
593
hg19
501
GRCh38
Lab
686
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
organ_slims!
blood vessel
epithelium
BIOSAMPLE
ASSAY
757 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
tissue
liver
140
166
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
hepatic stellate cell
1
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