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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
188
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
209
DNA binding
192
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
108
control
98
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
74
November, 2017
50
August, 2017
40
May, 2022
30
December, 2017
24
August, 2021
10
July, 2019
October, 2019
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
348
bam
283
bigWig
173
tsv
138
fastq
106
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
446
Homo sapiens
Biosample type
316
tissue
104
cell line
13
in vitro differentiated cells
13
primary cell
Organ
909
pancreas
640
connective tissue
480
epithelium
473
adipose tissue
446
liver
368
heart
321
kidney
197
brain
180
vasculature
175
blood vessel
159
bone element
110
artery
96
musculature of body
53
limb
39
eye
34
embryo
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
2
intestine
2
pericardium
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
446
AMP
Genome assembly (visualization)
289
hg19
238
GRCh38
Lab
386
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
month_released!
October, 2019
organ_slims!
thymus
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
446 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
103
166
20
2
3
1
1
1
1
1
right lobe of liver
8
3
1
2
1
2
cell line
HepG2
81
14
1
1
2
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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