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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 62ChIP-seq
  • 61total RNA-seq
  • 45ATAC-seq
  • 7DNase-seq
  • 6single cell RNA-seq
  • 4Hi-C
  • 2WGBS
  • 1RRBS
  • 1pCHi-C
Assay category
  • 67Transcription
  • 62DNA binding
  • 52DNA accessibility
  • 43D chromatin structure
  • 3DNA methylation
Target of assay
  • 38histone
  • 38histone modification
  • 22broad histone mark
  • 16narrow histone mark
  • 15control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • October, 2019
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 6November, 2017
  • 4March, 2020
  • 3February, 2020
Available data
  • 139bam
  • 119bigWig
  • 99bed narrowPeak
  • 68tsv
  • 50bigBed narrowPeak
  • 11bed broadPeak
  • 11bigBed broadPeak
  • 9bed bed3+
  • 6fastq
  • 6tagAlign
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 2hic
Organism
  • 189Homo sapiens
Biosample type
  • 107tissue
  • 66cell line
  • 16primary cell
Organ
  • 928pancreas
  • 784liver
  • 680connective tissue
  • 490adipose tissue
  • 489epithelium
  • 385heart
  • 324kidney
  • 200brain
  • 189vasculature
  • 183blood vessel
  • 159bone element
  • 115artery
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 53limb
  • 40eye
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
  • 1vein
Project
  • 189AMP
Genome assembly (visualization)
  • 158GRCh38
  • 128hg19
Lab
  • 189AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

189 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
RRBS
pCHi-C
tissue
coronary artery51362
aorta1314121
ascending aorta1621
thoracic aorta1621
pulmonary artery2
cell line
smooth muscle cell of the coronary artery6528
primary cell
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
endothelial cell of umbilical vein1
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