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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 658ChIP-seq
  • 229total RNA-seq
  • 190ATAC-seq
  • 95single cell RNA-seq
  • 49pCHi-C
  • 44DNase-seq
  • 19RRBS
  • 15Hi-C
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 658DNA binding
  • 335Transcription
  • 249DNA accessibility
  • 28DNA methylation
  • 153D chromatin structure
Target of assay
  • 413transcription factor
  • 180histone
  • 180histone modification
  • 95narrow histone mark
  • 85broad histone mark
  • 82RNA binding protein
  • 81recombinant protein
  • 68control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1045bam
  • 975bigWig
  • 641bed narrowPeak
  • 630fastq
  • 503bigBed narrowPeak
  • 359tsv
  • 121bed broadPeak
  • 119bigBed broadPeak
  • 104bed bed3+
  • 102tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 10bedpe bed3+
  • 9hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 3tar
  • 2csv
  • 2ibed
  • 1bedpe
Organism
  • 1355Homo sapiens
Biosample type
  • 454primary cell
  • 435cell line
  • 287tissue
  • 175in vitro differentiated cells
  • 4stem cell
Organ
  • 420liver
  • 188pancreas
  • 145epithelium
  • 65connective tissue
  • 58blood
  • 58bodily fluid
  • 58brain
  • 39kidney
  • 33heart
  • 27vasculature
  • 22blood vessel
  • 22musculature of body
  • 16adipose tissue
  • 13embryo
  • 9bone element
  • 8skeleton
  • 7artery
  • 7eye
  • 4limb
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
  • 1vein
Project
  • 1184AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1049hg19
  • 904GRCh38
Lab
  • 1137AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 115inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
month_released!
  • October, 2019
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1355 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
RRBS
Hi-C
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
skeletal muscle myoblast15121
pancreatic alpha cell1116
cell line
HepG2335512112
GM1287856
EndoC_BH122263
H1-hESC8
HEK293T2
tissue
islet of Langerhans221037611234
liver3721111
brain6121
kidney12141
body of pancreas71
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)18
adipocyte71611
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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