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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 518ChIP-seq
  • 88ATAC-seq
  • 42total RNA-seq
  • 21pCHi-C
  • 19DNase-seq
  • 19RRBS
  • 8WGBS
  • 7Hi-C
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
Assay category
  • 518DNA binding
  • 114DNA accessibility
  • 48Transcription
  • 27DNA methylation
  • 73D chromatin structure
Target of assay
  • 380transcription factor
  • 88histone
  • 88histone modification
  • 81recombinant protein
  • 73RNA binding protein
  • 51control
  • 46narrow histone mark
  • 42broad histone mark
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • October, 2019
  • 62November, 2018
  • 59December, 2017
  • 56May, 2020
  • 32February, 2021
  • 32June, 2019
  • 28December, 2018
  • 24July, 2019
  • 23August, 2017
  • 23November, 2019
  • 21January, 2019
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 605bam
  • 554bigWig
  • 508bed narrowPeak
  • 501fastq
  • 466bigBed narrowPeak
  • 95bed broadPeak
  • 95bigBed broadPeak
  • 60tsv
  • 36bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 4bedpe bed3+
  • 4hdf5
  • 3tar
  • 3txt
  • 2hic
  • 2ibed
  • 1bed bed3
Organism
  • 748Homo sapiens
Biosample type
  • 435cell line
  • 156primary cell
  • 89tissue
  • 65in vitro differentiated cells
  • 3stem cell
Organ
  • 404liver
  • 68epithelium
  • 56blood
  • 56bodily fluid
  • 50pancreas
  • 24kidney
  • 20vasculature
  • 19brain
  • 15blood vessel
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 10heart
  • 4eye
  • 3artery
  • 1bone element
  • 1bone marrow
  • 1limb
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 719AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 603hg19
  • 521GRCh38
Lab
  • 704AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 64inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

748 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
RRBS
WGBS
Hi-C
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
cell line
HepG2335152112
GM1287856
EndoC_BH122263
H1-hESC8
HEK293T2
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
macrophage11
skeletal muscle satellite cell8
tissue
liver311
islet of Langerhans1911
body of pancreas7
thoracic aorta7
kidney14
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
hepatocyte15
adipocyte41
cardiomyocytes (cardiac muscle cell)1112
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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