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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 446ChIP-seq
Assay category
  • 446DNA binding
Target of assay
  • 821histone modification
  • 820histone
  • 507transcription factor
  • 446broad histone mark
  • 373narrow histone mark
  • 304control
  • 114RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 109August, 2017
  • 76May, 2021
  • 58May, 2019
  • October, 2019
  • 50November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2019
  • 4January, 2019
Available data
  • 375bigWig
  • 370bed narrowPeak
  • 323bam
  • 204bigBed narrowPeak
  • 147tagAlign
  • 118fastq
  • 34bed broadPeak
  • 14bigBed broadPeak
  • 12bed bed3+
Organism
  • 442Homo sapiens
Biosample type
  • 264tissue
  • 110primary cell
  • 56in vitro differentiated cells
  • 15cell line
  • 1stem cell
Organ
  • 74pancreas
  • 67brain
  • 54heart
  • 44connective tissue
  • 39liver
  • 32epithelium
  • 22blood vessel
  • 22vasculature
  • 20adipose tissue
  • 20musculature of body
  • 12kidney
  • 4embryo
  • 4limb
  • 4spleen
Project
  • 402AMP
  • 44T1D
Genome assembly (visualization)
  • 342GRCh38
  • 319hg19
Lab
  • 351AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

446 results

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Clear Filters
ChIP-seq
tissue
left cardiac atrium20
subcutaneous abdominal adipose tissue20
liver19
heart left ventricle15
islet of Langerhans14
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
pancreatic ductal cell6
skeletal muscle myoblast6
in vitro differentiated cells
adipocyte20
embryonic stem cell11
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
cell line
HepG29
EndoC_BH16
stem cell
hESC1
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