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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
70
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
16
histone
16
histone modification
10
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
narrow histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
15
October, 2019
8
January, 2021
1
January, 2018
1
March, 2020
Available data
73
bam
64
bigWig
61
bed narrowPeak
61
bigBed narrowPeak
59
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
84
Homo sapiens
Biosample type
60
cell line
24
primary cell
Organ
862
pancreas
731
liver
651
connective tissue
adipose tissue
470
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
8
T1D
Genome assembly (visualization)
66
hg19
60
GRCh38
Lab
76
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
month_released!
September, 2017
organ_slims!
adipose tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
59
1
primary cell
endothelial cell of umbilical vein
11
2
2
1
peripheral blood mononuclear cell
8
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