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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
2
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
192
DNA binding
36
DNA accessibility
21
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
control
2
RNA binding protein
2
transcription factor
Date released
83
October, 2019
74
November, 2017
29
June, 2019
25
May, 2019
14
July, 2019
13
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
212
bigWig
210
bam
200
bed narrowPeak
124
bigBed narrowPeak
99
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
24
tsv
14
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
256
Homo sapiens
Biosample type
245
tissue
11
primary cell
Organ
821
pancreas
683
liver
649
connective tissue
467
adipose tissue
433
epithelium
373
heart
342
kidney
255
brain
214
vasculature
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
256
AMP
Genome assembly (visualization)
211
GRCh38
154
hg19
Lab
256
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
September, 2018
organ_slims!
blood vessel
target.investigated_as!
control
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
tissue
brain
17
14
1
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
temporal lobe
13
1
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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