Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 283target gene predictions
  • 193accessible chromatin
  • 51candidate regulatory elements
  • 48histone modifications
  • 36Fine-mapped variants
  • 29eQTL
  • 19gene expression
  • 18differential activity
  • 18variant allelic effects
  • 16binding sites
  • 12chromatin state
Date released
  • 418July, 2026
  • September, 2022
  • 110February, 2021
  • 38March, 2020
  • 29January, 2020
  • 21June, 2020
  • 19May, 2020
  • 18February, 2020
  • 18January, 2022
  • 18May, 2026
  • 11May, 2021
  • 6August, 2017
  • 6October, 2022
  • 4May, 2019
  • 3September, 2023
  • 1February, 2024
  • 1February, 2025
  • 1March, 2024
  • 1November, 2019
Available data
  • 624bed bed3+
  • 67tsv
  • 21bigWig
  • 6bed bed9
  • 6bigBed bed9
Organism
  • 722Homo sapiens
Collection Tags
  • 249ENCODE-rE2G
  • 133CATlas
  • 79ChIP-Atlas
  • 62ENCODE
  • 61GTEx
  • 36HDMA
  • 33DGA
  • 18pyxis
  • 17T1D
  • 17T2D
  • 17eQTLCatalogue
  • 5AMP
Biosample type
  • 434tissue
  • 219primary cell
  • 57cell line
  • 12in vitro differentiated cells
  • 1stem cell
Organ
  • 3296blood
  • 2827vasculature
  • 2801blood vessel
  • 2778bodily fluid
  • 2653vein
  • 801epithelium
  • 723brain
  • 531kidney
  • 398connective tissue
  • 380heart
  • 275pancreas
  • 230lung
  • 194intestine
  • 194liver
  • 194skin of body
  • 182musculature of body
  • 134embryo
  • 134eye
  • 128large intestine
  • 118adipose tissue
  • 111muscle organ
  • 106limb
  • 81uterus
  • 75extraembryonic component
  • 71stomach
  • 67artery
  • 64bone element
  • 62mammary gland
  • 60__MARKER__
  • 60adrenal gland
  • 60thymus
  • 49placenta
  • 48prostate gland
  • 45spleen
  • 40gonad
  • 40small intestine
  • 38lymph node
  • 35thyroid gland
  • 34penis
  • 34ureter
  • 27esophagus
  • 25spinal cord
  • 20ovary
  • 19testis
  • 16nerve
  • 15lymphatic vessel
  • 15skeleton
  • 13pituitary gland
  • 10bone marrow
  • 10bronchus
  • 9breast
  • 9lymphoid tissue
  • 9mouth
  • 7urinary bladder
  • 6tongue
  • 6vagina
  • 5trachea
  • 1embryonic structure
  • 1gallbladder
  • 1nose
  • 1pericardium
Project
  • 723AMP
Genome assembly (visualization)
  • 510GRCh38
  • 243hg19
month_released!
  • September, 2022
BIOSAMPLE
TYPE

723 results

search-icontable-tab-icon
Clear Filters
target gene predictions
accessible chromatin
candidate regulatory elements
histone modifications
Fine-mapped variants
eQTL
gene expression
differential activity
variant allelic effects
binding sites
chromatin state
tissue
head of caudate nucleus86
dorsolateral prefrontal cortex5711
posterior cingulate gyrus48
brain14213321112
caudate nucleus122132111
primary cell
glutamatergic neuron815
GABAergic neuron22
astrocyte182
medium spiny neuron8
neuron8
cell line
pituitary stalk10
SK-N-DZ2121
SK-N-MC11112
SK-N-SH321
BE(2)-C112
in vitro differentiated cells
brain2
hippocampal neuron11
ESC dervived hypothalamic neuron (arcuate nucleus)1
ESC dervived hypothalamic progenitor (arcuate nucleus)1
astrocyte1
stem cell
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego