Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
253
gene expression
206
accessible chromatin
92
differential activity
73
target gene predictions
45
candidate regulatory elements
42
binding sites
41
variant allelic effects
26
histone modifications
5
chromatin state
4
eQTL
2
caQTL
Date released
187
February, 2021
155
September, 2023
September, 2022
127
November, 2021
76
February, 2024
38
March, 2023
34
May, 2021
24
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
9
February, 2020
7
April, 2020
6
August, 2018
6
March, 2020
6
October, 2022
5
October, 2019
3
August, 2017
2
March, 2024
2
May, 2022
1
January, 2022
1
July, 2020
1
November, 2019
Available data
434
bed bed3+
324
tsv
173
bigWig
78
txt
13
bigBed narrowPeak
6
csv
2
bed bed9
2
bigBed bed9
Organism
789
Homo sapiens
Biosample type
679
primary cell
50
tissue
40
cell line
20
in vitro differentiated cells
Organ
798
epithelium
427
kidney
340
connective tissue
286
brain
233
pancreas
191
vasculature
171
musculature of body
147
heart
144
blood vessel
143
bodily fluid
138
blood
134
embryo
125
intestine
110
liver
106
limb
102
skin of body
101
lung
82
eye
76
large intestine
71
uterus
65
adipose tissue
54
artery
50
stomach
47
bone element
47
extraembryonic component
45
mammary gland
39
prostate gland
38
lymph node
penis
31
adrenal gland
27
small intestine
26
gonad
25
placenta
25
ureter
24
esophagus
19
spinal cord
17
vein
16
nerve
16
spleen
16
thymus
15
lymphatic vessel
testis
13
pituitary gland
11
ovary
11
thyroid gland
10
bone marrow
10
bronchus
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Project
478
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
439
hg19
186
GRCh38
month_released!
September, 2022
organ_slims!
penis
testis
BIOSAMPLE
TYPE
789 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
differential activity
target gene predictions
candidate regulatory elements
binding sites
variant allelic effects
histone modifications
chromatin state
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
2
1
2
4
epithelial cell of proximal tubule
16
1
1
1
1
pancreatic ductal cell
3
6
3
3
1
1
2
glomerular endothelial cell
14
2
1
1
+ See 142 more…
tissue
pigmented layer of retina
20
breast epithelium
1
1
3
esophagus squamous epithelium
1
4
kidney epithelium
1
1
pancreatic ductal cell
2
+ See 16 more…
cell line
EndoC_BH1
8
8
3
1
1
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
dermis lymphatic vessel endothelial cell
1
1
+ See 5 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
dermis microvascular lymphatic vessel endothelial cell
1
1
+ See 3 more…
See all biosamples
Download