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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
49
single cell RNA-seq
32
pCHi-C
15
total RNA-seq
11
ATAC-seq
10
Hi-C
Assay category
83
DNA binding
64
Transcription
11
DNA accessibility
10
3D chromatin structure
Target of assay
63
histone
63
histone modification
37
broad histone mark
26
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
144
bam
141
bigWig
94
tsv
68
bed narrowPeak
64
bigBed narrowPeak
51
fastq
12
bedpe bed3+
10
hic
2
ibed
Organism
200
Homo sapiens
Biosample type
126
tissue
51
primary cell
11
cell line
8
in vitro differentiated cells
4
stem cell
Organ
64
heart
60
pancreas
46
epithelium
25
kidney
5
musculature of body
4
blood vessel
4
connective tissue
4
vasculature
3
liver
2
brain
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
186
AMP
7
HPAP
7
T1D
Genome assembly (visualization)
146
hg19
136
GRCh38
Lab
193
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ChIP-seq
single cell RNA-seq
pCHi-C
total RNA-seq
ATAC-seq
Hi-C
tissue
heart left ventricle
35
1
1
1
kidney
23
heart right ventricle
13
1
1
1
islet of Langerhans
2
6
2
2
heart
9
+ See 18 more…
primary cell
pancreatic alpha cell
3
5
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
+ See 6 more…
cell line
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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