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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
50
single cell RNA-seq
26
total RNA-seq
16
snATAC-seq
14
ATAC-seq
Assay category
112
DNA binding
76
Transcription
30
DNA accessibility
Target of assay
92
histone
92
histone modification
54
broad histone mark
38
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
200
bam
186
bigWig
117
fastq
111
bed narrowPeak
78
bigBed narrowPeak
75
tsv
1
csv
Organism
218
Homo sapiens
Biosample type
124
primary cell
94
tissue
Organ
119
pancreas
94
epithelium
57
heart
23
kidney
8
blood
8
bodily fluid
2
connective tissue
Project
202
AMP
16
T1D
Genome assembly (visualization)
186
hg19
185
GRCh38
Lab
202
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
218 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
primary cell
pancreatic ductal cell
13
6
4
4
pancreatic acinar cell
8
6
2
3
pancreatic beta cell
3
10
4
pancreatic alpha cell
3
10
3
pancreatic endocrine cell
11
+ See 7 more…
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
islet of Langerhans
6
4
heart
9
+ See 1 more…
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