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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
702
ChIP-seq
89
total RNA-seq
49
single cell RNA-seq
12
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
702
DNA binding
138
Transcription
18
DNA accessibility
15
DNA methylation
Target of assay
291
transcription factor
287
histone modification
286
histone
159
broad histone mark
126
narrow histone mark
121
control
66
recombinant protein
45
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
723
bam
662
bigWig
662
fastq
455
bed narrowPeak
354
bigBed narrowPeak
163
tagAlign
138
tsv
111
bed broadPeak
79
bigBed broadPeak
33
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
3
tar
Organism
866
Homo sapiens
Biosample type
372
tissue
315
cell line
118
primary cell
68
in vitro differentiated cells
Organ
369
liver
234
pancreas
127
connective tissue
91
brain
75
epithelium
57
adipose tissue
26
musculature of body
6
vasculature
3
blood vessel
Project
866
AMP
7
HPAP
Genome assembly (visualization)
606
hg19
585
GRCh38
Lab
866
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
49
missing controlled_by
Audit category:
37
inconsistent control read length
5
inconsistent control run_type
3
inconsistent assembly
BIOSAMPLE
ASSAY
873 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
6
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
layer of hippocampus
22
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cell line
HepG2
315
primary cell
pancreatic alpha cell
13
3
6
pancreatic beta cell
13
3
3
skeletal muscle myoblast
15
1
2
pancreatic endocrine cell
12
pancreatic acinar cell
6
1
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in vitro differentiated cells
adipocyte
67
1
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