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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
52
single cell RNA-seq
23
ChIP-seq
2
pCHi-C
Assay category
242
Transcription
100
DNA accessibility
23
DNA binding
Target of assay
27
histone
27
histone modification
narrow histone mark
23
control
Date released
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
308
bam
285
bigWig
241
tsv
48
fastq
23
tagAlign
1
bedpe bed3+
Organism
367
Homo sapiens
Biosample type
193
primary cell
172
tissue
1
cell line
1
in vitro differentiated cells
Organ
167
liver
42
pancreas
36
epithelium
3
connective tissue
1
adipose tissue
Project
322
AMP
45
T1D
Genome assembly (visualization)
285
hg19
240
GRCh38
Lab
322
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
month_released!
February, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
367 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic acinar cell
7
pancreatic delta cell
7
+ See 34 more…
tissue
liver
143
23
islet of Langerhans
6
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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