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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
single cell RNA-seq
32
pCHi-C
15
total RNA-seq
14
ATAC-seq
10
Hi-C
5
GRO-seq
3
ChIP-seq
Assay category
64
Transcription
14
DNA accessibility
10
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
94
tsv
84
bigWig
65
bam
56
fastq
12
bedpe bed3+
10
hic
3
bed narrowPeak
2
ibed
Organism
128
Homo sapiens
Biosample type
51
primary cell
48
tissue
12
cell line
12
in vitro differentiated cells
5
stem cell
Organ
60
pancreas
46
epithelium
7
heart
6
musculature of body
5
connective tissue
4
blood vessel
4
vasculature
3
liver
2
adipose tissue
2
brain
2
intestine
2
kidney
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
114
AMP
7
HPAP
7
T1D
Genome assembly (visualization)
84
hg19
72
GRCh38
5
hg18
Lab
121
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
BIOSAMPLE
ASSAY
128 results
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Clear Filters
single cell RNA-seq
pCHi-C
total RNA-seq
ATAC-seq
Hi-C
GRO-seq
ChIP-seq
primary cell
pancreatic alpha cell
3
5
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
+ See 6 more…
tissue
islet of Langerhans
6
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 17 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
GM12878
1
MCF-7
1
RCC 7860 VHL
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
Posterior foregut
1
definitive endodermal cell
1
embryonic stem cell
1
+ See 2 more…
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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