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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
100
ATAC-seq
68
ChIP-seq
49
single cell RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
244
Transcription
101
DNA accessibility
68
DNA binding
Target of assay
28
histone
28
histone modification
28
narrow histone mark
26
control
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
355
bam
329
bigWig
243
tsv
67
fastq
50
tagAlign
42
bed narrowPeak
15
bigBed narrowPeak
Organism
414
Homo sapiens
Biosample type
200
tissue
190
primary cell
24
cell line
Organ
199
liver
40
pancreas
33
epithelium
18
blood
18
bodily fluid
spleen
2
connective tissue
Project
369
AMP
45
T1D
Genome assembly (visualization)
329
hg19
276
GRCh38
Lab
369
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
organ_slims!
spleen
BIOSAMPLE
ASSAY
414 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
snATAC-seq
tissue
liver
143
50
islet of Langerhans
6
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic delta cell
7
pancreatic acinar cell
6
+ See 34 more…
cell line
GM12878
18
HepG2
5
1
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