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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
total RNA-seq
15
ChIP-seq
10
single cell RNA-seq
3
ATAC-seq
Assay category
34
Transcription
15
DNA binding
3
DNA accessibility
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
34
tsv
22
fastq
21
bam
19
bigWig
14
tagAlign
8
bed narrowPeak
6
bigBed narrowPeak
3
bed broadPeak
Organism
52
Homo sapiens
Biosample type
42
tissue
10
primary cell
Organ
pancreas
33
epithelium
28
brain
5
connective tissue
3
adipose tissue
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
eye
1
liver
1
nerve
1
spinal cord
1
spleen
Project
52
AMP
Genome assembly (visualization)
19
GRCh38
18
hg19
Lab
52
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
pancreas
BIOSAMPLE
ASSAY
52 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
brain
15
cerebellum (Hemisphere)
1
1
omental fat pad
1
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
+ See 21 more…
primary cell
mesenchymal cell
5
pancreatic cell
3
enteroendocrine cell
2
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