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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
total RNA-seq
57
ChIP-seq
53
single cell RNA-seq
20
ATAC-seq
18
small RNA-seq
14
RRBS
12
WGBS
8
Hi-C
2
FAIRE-seq
Assay category
145
Transcription
57
DNA binding
26
DNA methylation
22
DNA accessibility
8
3D chromatin structure
Target of assay
39
histone
39
histone modification
21
broad histone mark
18
narrow histone mark
14
transcription factor
7
control
6
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
106
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
232
bam
231
bigWig
147
fastq
144
tsv
74
bed narrowPeak
37
bigBed narrowPeak
22
bed bedMethyl
22
bigBed bedMethyl
4
bed bed3+
4
hdf5
1
csv
Organism
258
Homo sapiens
Biosample type
146
primary cell
89
tissue
23
cell line
Organ
117
pancreas
107
epithelium
25
heart
20
connective tissue
18
blood
18
bodily fluid
18
brain
15
liver
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
musculature of body
7
spleen
5
limb
3
artery
pericardium
1
eye
Project
258
AMP
Genome assembly (visualization)
236
hg19
225
GRCh38
Lab
258
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
32
missing controlled_by
organ_slims!
pericardium
BIOSAMPLE
ASSAY
258 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
6
4
pancreatic acinar cell
2
8
6
3
pancreatic beta cell
10
3
4
pancreatic alpha cell
10
3
3
pancreatic endocrine cell
11
+ See 30 more…
tissue
heart left ventricle
2
2
1
4
islet of Langerhans
6
1
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 26 more…
cell line
GM12878
18
HepG2
5
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