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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
56
single cell RNA-seq
32
ChIP-seq
31
ATAC-seq
18
small RNA-seq
14
RRBS
12
WGBS
8
Hi-C
2
FAIRE-seq
Assay category
144
Transcription
33
DNA accessibility
32
DNA binding
26
DNA methylation
8
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
106
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
205
bigWig
202
bam
139
tsv
117
fastq
53
bed narrowPeak
22
bed bedMethyl
22
bigBed bedMethyl
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
243
Homo sapiens
Biosample type
146
primary cell
97
tissue
Organ
117
pancreas
107
epithelium
25
heart
25
kidney
21
connective tissue
18
brain
13
adipose tissue
12
vasculature
11
blood vessel
10
liver
10
musculature of body
5
limb
3
artery
pericardium
1
eye
Project
243
AMP
Genome assembly (visualization)
211
GRCh38
211
hg19
Lab
229
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
Audit category:
32
missing controlled_by
organ_slims!
pericardium
BIOSAMPLE
ASSAY
243 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
FAIRE-seq
primary cell
pancreatic ductal cell
4
6
13
4
pancreatic acinar cell
2
6
8
3
pancreatic beta cell
10
3
4
pancreatic alpha cell
10
3
3
pancreatic endocrine cell
11
+ See 30 more…
tissue
kidney
3
11
1
1
heart left ventricle
2
2
1
4
islet of Langerhans
6
1
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 26 more…
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