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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
9
DNase-seq
7
ATAC-seq
7
WGBS
5
total RNA-seq
3
Hi-C
1
FAIRE-seq
1
MPRA
1
single cell RNA-seq
Assay category
175
DNA binding
17
DNA accessibility
7
DNA methylation
6
Transcription
3
3D chromatin structure
Target of assay
84
transcription factor
67
histone
67
histone modification
41
broad histone mark
31
RNA binding protein
26
narrow histone mark
24
control
16
recombinant protein
13
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
196
bam
178
bigWig
159
bed narrowPeak
158
bigBed narrowPeak
125
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
3
bedpe bed3+
3
cool
3
hic
1
csv
1
txt
Organism
208
Homo sapiens
Biosample type
113
tissue
85
cell line
11
primary cell
Organ
58
liver
57
heart
33
blood
33
bodily fluid
23
kidney
17
pancreas
16
spleen
10
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
199
AMP
10
HPAP
Genome assembly (visualization)
176
GRCh38
165
hg19
Lab
199
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
209 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
Hi-C
FAIRE-seq
MPRA
single cell RNA-seq
tissue
heart left ventricle
35
kidney
23
spleen
13
1
2
heart right ventricle
13
heart
9
+ See 6 more…
cell line
HepG2
45
1
5
GM12878
33
MIN6
1
primary cell
pancreatic alpha cell
5
1
pancreatic beta cell
2
1
pancreatic acinar cell
1
pancreatic cell
1
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