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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
26
total RNA-seq
21
ATAC-seq
9
DNase-seq
7
WGBS
3
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
1
MPRA
Assay category
182
DNA binding
31
DNA accessibility
28
Transcription
7
DNA methylation
3
3D chromatin structure
Target of assay
92
histone
92
histone modification
70
transcription factor
54
broad histone mark
38
narrow histone mark
25
RNA binding protein
20
control
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
238
bam
224
bigWig
184
bed narrowPeak
168
fastq
151
bigBed narrowPeak
26
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
2
csv
1
txt
Organism
251
Homo sapiens
Biosample type
106
tissue
84
primary cell
62
cell line
Organ
89
pancreas
71
epithelium
57
heart
53
liver
23
kidney
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
242
AMP
10
HPAP
Genome assembly (visualization)
222
GRCh38
211
hg19
Lab
242
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
252 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
MPRA
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
spleen
6
1
2
+ See 6 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic alpha cell
10
8
1
pancreatic beta cell
10
6
1
pancreatic acinar cell
8
2
3
1
pancreatic endocrine cell
11
+ See 1 more…
cell line
HepG2
45
1
GM12878
15
MIN6
1
See all biosamples
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