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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
119
DNA binding
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
77
histone
77
histone modification
45
broad histone mark
32
narrow histone mark
25
control
17
transcription factor
5
RNA binding protein
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
168
bed narrowPeak
124
bam
123
tsv
109
bigWig
64
bigBed narrowPeak
64
xls
57
txt
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
392
Homo sapiens
Biosample type
309
tissue
42
cell line
42
in vitro differentiated cells
Organ
153
kidney
149
heart
35
liver
8
embryo
6
blood vessel
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
393
AMP
Genome assembly (visualization)
166
GRCh38
122
hg19
Lab
225
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
month_released!
December, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
393 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
23
8
64
49
6
1
heart left ventricle
35
18
heart right ventricle
13
17
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
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