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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
73
total RNA-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
179
Transcription
118
DNA binding
82
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
80
histone
80
histone modification
46
broad histone mark
34
narrow histone mark
26
control
17
transcription factor
RNA binding protein
Date released
683
February, 2021
369
November, 2017
341
May, 2020
333
May, 2021
314
August, 2021
296
October, 2019
217
August, 2017
210
June, 2019
149
February, 2023
113
May, 2019
102
July, 2019
96
May, 2022
90
December, 2017
76
April, 2019
60
November, 2018
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
May, 2024
33
December, 2018
24
February, 2020
24
January, 2019
19
April, 2020
18
October, 2017
18
October, 2018
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
167
bed narrowPeak
124
bam
122
tsv
108
bigWig
64
xls
61
bigBed narrowPeak
57
txt
24
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
389
Homo sapiens
Biosample type
303
tissue
42
in vitro differentiated cells
41
cell line
4
primary cell
Organ
152
kidney
146
heart
34
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
pancreas
2
artery
1
adipose tissue
Project
390
AMP
Genome assembly (visualization)
166
GRCh38
121
hg19
Lab
225
AMP-T2D consortium
128
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
month_released!
June, 2018
organ_slims!
pancreas
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
390 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
22
8
64
49
6
1
heart left ventricle
32
18
heart right ventricle
13
17
left cardiac atrium
18
right cardiac atrium
18
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
17
9
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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