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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
66
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
172
Transcription
123
DNA binding
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
80
histone
80
histone modification
46
broad histone mark
34
narrow histone mark
26
control
17
transcription factor
5
RNA binding protein
Date released
709
February, 2021
411
August, 2017
406
November, 2017
397
May, 2021
341
May, 2020
311
August, 2021
245
October, 2019
205
February, 2023
200
May, 2022
186
June, 2019
168
July, 2018
113
May, 2019
103
July, 2019
88
November, 2018
81
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
26
February, 2018
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
171
bed narrowPeak
120
bam
115
tsv
104
bigWig
64
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
390
Homo sapiens
Biosample type
309
tissue
42
in vitro differentiated cells
36
cell line
4
primary cell
Organ
153
kidney
149
heart
35
liver
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
391
AMP
Genome assembly (visualization)
161
GRCh38
117
hg19
Lab
223
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
May, 2023
organ_slims!
embryo
limb
BIOSAMPLE
ASSAY
391 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
23
8
64
49
6
1
heart left ventricle
35
18
heart right ventricle
13
17
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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