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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
38
ATAC-seq
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
1
Hi-C
1
MPRA
Assay category
114
DNA binding
60
DNA accessibility
60
Transcription
1
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
34
transcription factor
23
narrow histone mark
18
control
6
RNA binding protein
2
chromatin remodeller
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
137
bam
133
bed narrowPeak
115
bigWig
94
bigBed narrowPeak
59
fastq
54
zippedFastqFolder
8
txt
1
bed bed3+
Organism
235
Homo sapiens
Biosample type
153
tissue
54
primary cell
29
cell line
Organ
107
pancreas
epithelium
57
heart
41
liver
27
blood
27
bodily fluid
23
kidney
7
spleen
2
musculature of body
Project
182
AMP
54
HPAP
Genome assembly (visualization)
134
hg19
94
GRCh38
Lab
118
AMP-T2D consortium
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
organ_slims!
epithelium
BIOSAMPLE
ASSAY
236 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
Hi-C
MPRA
tissue
liver
20
20
heart left ventricle
35
islet of Langerhans
18
6
kidney
23
heart right ventricle
13
+ See 3 more…
primary cell
Langerhans cell
33
21
cell line
GM12878
27
HepG2
1
MIN6
1
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