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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
184
DNA binding
9
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
98
transcription factor
60
histone
60
histone modification
37
broad histone mark
27
RNA binding protein
24
control
23
narrow histone mark
16
recombinant protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
199
bam
174
bigWig
167
bed narrowPeak
166
bigBed narrowPeak
122
fastq
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
202
Homo sapiens
Biosample type
112
tissue
89
cell line
1
primary cell
Organ
57
heart
54
liver
42
blood
42
bodily fluid
23
kidney
16
spleen
7
pancreas
2
brain
adipose tissue
1
connective tissue
Project
202
AMP
Genome assembly (visualization)
172
GRCh38
165
hg19
Lab
202
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
202 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
Hi-C
single cell RNA-seq
tissue
heart left ventricle
35
kidney
23
spleen
13
1
2
heart right ventricle
13
heart
9
+ See 5 more…
cell line
HepG2
45
1
1
GM12878
42
primary cell
pancreatic cell
1
See all biosamples
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