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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
50
single cell RNA-seq
5
total RNA-seq
4
ATAC-seq
2
RNA microarray
1
Hi-C
Assay category
80
DNA binding
55
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
85
bam
70
bigWig
65
bed narrowPeak
64
bigBed narrowPeak
9
tsv
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
142
Homo sapiens
Biosample type
135
tissue
5
primary cell
2
in vitro differentiated cells
Organ
73
kidney
57
heart
6
epithelium
5
liver
5
pancreas
Project
95
AMP
47
KPMP
Genome assembly (visualization)
73
hg19
71
GRCh38
Lab
90
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
4
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
Hi-C
tissue
kidney
23
48
heart left ventricle
35
heart right ventricle
13
heart
9
islet of Langerhans
4
1
+ See 2 more…
primary cell
hepatocyte
5
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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