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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
26
ATAC-seq
25
total RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RNA microarray
Assay category
50
DNA binding
28
Transcription
26
DNA accessibility
2
3D chromatin structure
Target of assay
70
histone
70
histone modification
broad histone mark
27
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
100
bam
59
bed narrowPeak
58
bigWig
29
tsv
27
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
108
Homo sapiens
Biosample type
86
tissue
10
cell line
7
in vitro differentiated cells
5
primary cell
Organ
49
pancreas
30
heart
16
epithelium
16
kidney
5
liver
1
adipose tissue
1
connective tissue
Project
108
AMP
Genome assembly (visualization)
86
hg19
83
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
4
audit script error
organ_slims!
pericardium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
RNA microarray
tissue
islet of Langerhans
19
19
1
heart left ventricle
20
kidney
13
1
heart right ventricle
6
heart
4
+ See 3 more…
cell line
EndoC_BH1
7
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
2
primary cell
hepatocyte
5
See all biosamples
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