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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ChIP-seq
17
total RNA-seq
4
ATAC-seq
1
Hi-C
Assay category
178
DNA binding
17
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
106
histone
106
histone modification
64
broad histone mark
51
control
42
narrow histone mark
21
transcription factor
15
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
195
bam
143
bigWig
126
bed narrowPeak
109
bigBed narrowPeak
100
fastq
17
tsv
1
bed broadPeak
1
bedpe
1
hic
Organism
200
Homo sapiens
Biosample type
159
tissue
39
in vitro differentiated cells
2
primary cell
Organ
58
pancreas
57
heart
23
adipose tissue
23
connective tissue
23
kidney
13
embryo
2
epithelium
Project
200
AMP
Genome assembly (visualization)
146
hg19
144
GRCh38
Lab
195
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
tissue
heart left ventricle
35
body of pancreas
33
kidney
23
endocrine pancreas
16
heart right ventricle
13
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
primary cell
pancreatic acinar cell
2
See all biosamples
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