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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
19
total RNA-seq
10
MeRIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
81
DNA binding
19
Transcription
2
DNA accessibility
Target of assay
58
histone
58
histone modification
35
broad histone mark
23
control
23
narrow histone mark
5
nucleotide modification
5
transcription factor
3
RNA binding protein
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
101
bam
83
bigWig
65
bed narrowPeak
47
bigBed narrowPeak
39
fastq
19
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
112
Homo sapiens
Biosample type
61
tissue
39
in vitro differentiated cells
6
cell line
6
primary cell
Organ
57
heart
kidney
13
embryo
10
pancreas
6
connective tissue
6
epithelium
Project
112
AMP
Genome assembly (visualization)
84
hg19
83
GRCh38
Lab
102
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
2
inconsistent control read length
organ_slims!
kidney
BIOSAMPLE
ASSAY
112 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
ATAC-seq
DNase-seq
tissue
heart left ventricle
35
heart right ventricle
13
heart
9
islet of Langerhans
4
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
1
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