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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
596
total RNA-seq
99
ATAC-seq
88
ChIP-seq
84
RNA microarray
52
single cell RNA-seq
49
snATAC-seq
47
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
648
Transcription
148
DNA accessibility
88
DNA binding
47
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
17
control
11
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
675
bam
636
bigWig
584
tsv
134
zippedFastqFolder
126
bed narrowPeak
96
txt
69
fastq
64
bigBed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
3
bed bed3+
2
bed bed3
Organism
1020
Homo sapiens
Biosample type
716
tissue
182
primary cell
96
cell line
26
in vitro differentiated cells
Organ
457
connective tissue
388
adipose tissue
150
bone element
137
pancreas
126
heart
112
epithelium
69
blood vessel
69
vasculature
68
artery
44
liver
31
kidney
12
brain
9
limb
8
skeleton
4
musculature of body
1
eye
1
nerve
1
spinal cord
Project
841
AMP
179
HPAP
Genome assembly (visualization)
678
hg19
632
GRCh38
Lab
777
AMP-T2D consortium
179
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
129
inconsistent ontology term
33
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
1020 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
liver
20
20
1
heart left ventricle
35
+ See 42 more…
primary cell
Langerhans cell
45
48
pancreatic alpha cell
22
31
pancreatic beta cell
13
16
pancreatic acinar cell
4
osteoblast
1
1
1
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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