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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
total RNA-seq
130
ChIP-seq
100
ATAC-seq
1
pCHi-C
Assay category
215
Transcription
130
DNA binding
100
DNA accessibility
Target of assay
87
histone
87
histone modification
50
narrow histone mark
37
broad histone mark
37
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
362
bam
325
bigWig
214
tsv
92
bed narrowPeak
64
bigBed narrowPeak
50
tagAlign
Organism
446
Homo sapiens
Biosample type
298
tissue
147
primary cell
1
cell line
Organ
195
liver
60
heart
23
kidney
12
brain
3
blood vessel
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
nerve
1
pancreas
1
spinal cord
Project
401
AMP
45
T1D
Genome assembly (visualization)
325
hg19
271
GRCh38
Lab
401
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
month_released!
November, 2019
organ_slims!
stomach
BIOSAMPLE
ASSAY
446 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
liver
143
50
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
+ See 25 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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