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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
62
total RNA-seq
37
single cell RNA-seq
26
ATAC-seq
22
snATAC-seq
16
small RNA-seq
13
RRBS
12
WGBS
8
Hi-C
2
FAIRE-seq
Assay category
115
Transcription
103
DNA binding
50
DNA accessibility
25
DNA methylation
8
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
35
control
23
narrow histone mark
11
transcription factor
9
RNA binding protein
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
180
bam
171
bigWig
97
bed narrowPeak
71
bigBed narrowPeak
61
tsv
54
zippedFastqFolder
23
fastq
21
bed bedMethyl
21
bigBed bedMethyl
5
bed bed3+
4
hdf5
1
txt
Organism
301
Homo sapiens
Biosample type
216
tissue
85
primary cell
Organ
pancreas
95
epithelium
82
heart
50
liver
41
connective tissue
35
adipose tissue
34
kidney
18
brain
12
musculature of body
12
vasculature
11
blood vessel
5
limb
3
artery
2
pericardium
1
eye
Project
247
AMP
54
HPAP
Genome assembly (visualization)
176
hg19
144
GRCh38
Lab
207
AMP-T2D consortium
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
Audit category:
2
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
301 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
FAIRE-seq
tissue
heart left ventricle
35
2
2
1
4
liver
22
20
1
kidney
23
1
1
subcutaneous adipose tissue
12
4
1
omental fat pad
11
4
1
+ See 23 more…
primary cell
Langerhans cell
33
21
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 21 more…
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