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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
65
total RNA-seq
18
ATAC-seq
18
small RNA-seq
14
RRBS
10
WGBS
6
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
112
DNA binding
87
Transcription
24
DNA methylation
20
DNA accessibility
6
3D chromatin structure
Target of assay
92
histone
92
histone modification
54
broad histone mark
38
narrow histone mark
17
control
6
transcription factor
4
RNA binding protein
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
224
bam
212
bigWig
116
bed narrowPeak
86
tsv
80
bigBed narrowPeak
73
fastq
21
bed bedMethyl
21
bigBed bedMethyl
2
bed bed3+
2
hdf5
1
csv
Organism
249
Homo sapiens
Biosample type
150
tissue
99
primary cell
Organ
82
heart
78
pancreas
74
epithelium
34
kidney
18
brain
18
connective tissue
12
adipose tissue
vasculature
11
blood vessel
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
249
AMP
Genome assembly (visualization)
218
hg19
207
GRCh38
Lab
249
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
32
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
249 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
35
2
2
1
4
kidney
23
1
1
heart right ventricle
13
2
heart
9
2
1
1
omental fat pad
4
1
+ See 22 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 21 more…
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