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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
35
single cell RNA-seq
22
snATAC-seq
20
ATAC-seq
20
total RNA-seq
7
DNase-seq
3
WGBS
Assay category
150
DNA binding
55
Transcription
49
DNA accessibility
3
DNA methylation
Target of assay
70
transcription factor
60
histone
60
histone modification
37
broad histone mark
25
RNA binding protein
23
narrow histone mark
20
control
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
159
bam
158
bigWig
155
bed narrowPeak
134
bigBed narrowPeak
81
fastq
54
zippedFastqFolder
8
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
csv
1
txt
Organism
257
Homo sapiens
Biosample type
141
tissue
61
cell line
55
primary cell
Organ
pancreas
93
liver
80
epithelium
57
heart
23
kidney
15
blood
15
bodily fluid
9
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
203
AMP
54
HPAP
Genome assembly (visualization)
154
hg19
137
GRCh38
Lab
163
AMP-T2D consortium
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
Audit category:
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
257 results
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Clear Filters
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
tissue
liver
4
20
20
2
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
+ See 5 more…
cell line
HepG2
45
1
GM12878
15
primary cell
Langerhans cell
33
21
pancreatic cell
1
See all biosamples
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