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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
28
total RNA-seq
22
snATAC-seq
Assay category
133
DNA binding
99
DNA accessibility
62
Transcription
41
DNA methylation
Target of assay
90
histone
90
histone modification
56
broad histone mark
43
control
34
narrow histone mark
transcription factor
15
RNA binding protein
Date released
710
February, 2021
383
May, 2021
364
August, 2017
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
158
bam
134
zippedFastqFolder
128
bed narrowPeak
112
bigWig
89
bigBed narrowPeak
69
fastq
7
txt
2
tsv
1
bed bed3+
Organism
335
Homo sapiens
Biosample type
199
tissue
136
primary cell
Organ
147
pancreas
82
epithelium
52
heart
40
liver
22
kidney
18
adipose tissue
18
connective tissue
2
musculature of body
Project
201
AMP
134
HPAP
Genome assembly (visualization)
131
hg19
91
GRCh38
Lab
137
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
1
inconsistent control read length
month_released!
May, 2020
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
335 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
heart left ventricle
30
body of pancreas
24
islet of Langerhans
18
6
kidney
22
+ See 7 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
2
See all biosamples
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