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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
40
single cell RNA-seq
20
total RNA-seq
10
MeRIP-seq
4
ATAC-seq
1
DNase-seq
Assay category
74
DNA binding
60
Transcription
5
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
19
control
transcription factor
5
nucleotide modification
RNA binding protein
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
159
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
79
bam
68
bigWig
62
bed narrowPeak
60
bigBed narrowPeak
41
fastq
19
zippedFastqFolder
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
149
Homo sapiens
Biosample type
78
tissue
65
primary cell
6
cell line
Organ
52
heart
29
pancreas
25
epithelium
22
kidney
6
connective tissue
Project
90
AMP
59
HPAP
Genome assembly (visualization)
68
GRCh38
66
hg19
Lab
80
AMP-T2D consortium
59
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
target.investigated_as!
RNA binding protein
transcription factor
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
MeRIP-seq
ATAC-seq
DNase-seq
tissue
heart left ventricle
30
kidney
22
heart right ventricle
13
heart
9
islet of Langerhans
4
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
osteoblast
4
1
1
pancreatic beta cell
1
1
cell line
EndoC_BH1
6
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