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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
89
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
6
RRBS
5
DNase-seq
3
WGBS
1
ATAC-seq
1
FAIRE-seq
Assay category
220
DNA binding
98
Transcription
17
DNA accessibility
9
DNA methylation
Target of assay
153
histone modification
152
histone
83
broad histone mark
68
narrow histone mark
35
transcription factor
32
control
8
RNA binding protein
3
chromatin remodeller
Date released
400
November, 2017
373
May, 2021
341
May, 2020
325
August, 2017
312
August, 2021
297
February, 2021
278
October, 2019
197
June, 2019
152
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
87
November, 2018
83
July, 2019
80
April, 2019
75
December, 2017
57
March, 2020
51
October, 2018
47
September, 2023
44
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
14
May, 2023
12
September, 2018
10
November, 2020
7
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2022
1
October, 2022
Available data
240
fastq
238
bigWig
236
bam
122
bed narrowPeak
89
tsv
77
tagAlign
40
bed broadPeak
37
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
336
Homo sapiens
Biosample type
246
tissue
68
in vitro differentiated cells
30
primary cell
Organ
188
pancreas
125
connective tissue
adipose tissue
54
liver
epithelium
26
musculature of body
19
lung
Project
325
AMP
19
LungMap
Genome assembly (visualization)
244
hg19
216
GRCh38
Lab
325
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
27
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
adipose tissue
epithelium
BIOSAMPLE
ASSAY
344 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
RRBS
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
1
3
skeletal muscle tissue
22
4
lung
10
9
pancreas
14
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in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic endocrine cell
12
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