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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
single cell RNA-seq
74
ATAC-seq
71
total RNA-seq
68
ChIP-seq
16
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
186
Transcription
90
DNA accessibility
68
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
27
histone
27
histone modification
25
transcription factor
16
control
14
narrow histone mark
13
broad histone mark
7
RNA binding protein
6
chromatin remodeller
Date released
406
November, 2017
395
May, 2021
341
May, 2020
310
October, 2019
306
August, 2021
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
90
July, 2019
87
November, 2018
81
December, 2017
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
26
February, 2018
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
6
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
125
bed narrowPeak
120
tsv
71
bam
64
xls
63
bigWig
57
txt
30
fastq
24
tagAlign
21
bigBed narrowPeak
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
354
Homo sapiens
Biosample type
254
tissue
59
cell line
38
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
40
liver
19
lung
18
blood
18
bodily fluid
embryo
7
spleen
6
blood vessel
6
epithelium
6
vasculature
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
336
AMP
19
LungMap
Genome assembly (visualization)
123
GRCh38
74
hg19
Lab
172
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
connective tissue
embryo
BIOSAMPLE
ASSAY
355 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
cell line
HepG2
14
18
2
1
1
GM12878
18
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
primary cell
hepatocyte
4
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