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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
12
single cell RNA-seq
11
snATAC-seq
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
74
Transcription
27
DNA methylation
19
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
85
bigWig
82
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
127
Homo sapiens
Biosample type
97
tissue
31
primary cell
Organ
25
heart
19
lung
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
7
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
109
AMP
19
LungMap
Genome assembly (visualization)
91
hg19
79
GRCh38
Lab
109
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
single cell RNA-seq
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
lung
9
10
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
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