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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
snATAC-seq
25
total RNA-seq
9
single cell RNA-seq
4
ATAC-seq
1
Hi-C
Assay category
34
Transcription
30
DNA accessibility
1
3D chromatin structure
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
25
tsv
1
bam
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
64
Homo sapiens
Biosample type
57
tissue
8
primary cell
Organ
19
lung
14
pancreas
12
brain
8
blood
8
bodily fluid
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
liver
1
nerve
1
spinal cord
Project
30
AMP
19
LungMap
16
T1D
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
25
AMP-T2D consortium
19
Xin Sun, UCSD
16
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
65 results
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Clear Filters
snATAC-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
tissue
lung
10
9
islet of Langerhans
4
4
1
pancreas
4
Ammon's horn
1
C1 segment of cervical spinal cord
1
+ See 23 more…
primary cell
peripheral blood mononuclear cell
8
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