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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
93
total RNA-seq
11
snATAC-seq
10
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
114
DNA accessibility
103
Transcription
3
3D chromatin structure
Date released
715
February, 2021
406
November, 2017
404
August, 2017
399
May, 2021
341
May, 2020
318
August, 2021
314
October, 2019
218
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
76
fastq
65
bed narrowPeak
16
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
3
bedpe bed3+
3
bigWig
3
cool
3
hic
Organism
225
Homo sapiens
Biosample type
113
tissue
91
primary cell
16
in vitro differentiated cells
5
cell line
Organ
58
pancreas
54
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
18
lung
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
105
AMP
79
HPAP
23
T1D
18
LungMap
Genome assembly (visualization)
48
hg19
35
GRCh38
Lab
102
AMP-T2D consortium
79
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
18
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
225 results
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Clear Filters
ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
tissue
coronary artery
35
islet of Langerhans
11
5
2
lung
9
9
retina
15
2
pigmented layer of retina
12
2
+ See 7 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
1
pancreatic beta cell
10
1
gabaergic neuron
3
glutamatergic neuron
3
+ See 3 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
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