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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
57
single cell RNA-seq
10
MeRIP-seq
10
snATAC-seq
1
ATAC-seq
1
DNase-seq
Assay category
181
Transcription
12
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
170
bam
169
bigWig
168
tsv
50
fastq
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
202
Homo sapiens
Biosample type
143
tissue
54
primary cell
6
cell line
Organ
167
pancreas
39
epithelium
19
lung
8
connective tissue
Project
184
AMP
19
LungMap
Genome assembly (visualization)
170
GRCh38
170
hg19
Lab
174
AMP-T2D consortium
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
12
inconsistent ontology term
organ_slims!
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BIOSAMPLE
ASSAY
203 results
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Clear Filters
total RNA-seq
single cell RNA-seq
MeRIP-seq
snATAC-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans
120
4
lung
9
10
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
osteoblast
4
1
1
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 11 more…
cell line
EndoC_BH1
6
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