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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
77
ATAC-seq
43
single cell RNA-seq
41
WGBS
32
snATAC-seq
26
total RNA-seq
3
Hi-C
1
MPRA
Assay category
120
DNA binding
109
DNA accessibility
69
Transcription
41
DNA methylation
3
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
144
bam
135
bed narrowPeak
134
zippedFastqFolder
117
bigWig
97
bigBed narrowPeak
24
fastq
8
txt
3
bedpe bed3+
3
cool
3
hic
1
bed bed3+
Organism
341
Homo sapiens
Biosample type
200
tissue
142
primary cell
1
cell line
Organ
109
pancreas
88
epithelium
50
blood vessel
50
vasculature
40
liver
28
brain
21
heart
19
lung
9
musculature of body
7
limb
5
artery
5
kidney
Project
187
AMP
137
HPAP
19
LungMap
Genome assembly (visualization)
139
hg19
96
GRCh38
Lab
137
Klaus Kaestner, Upenn
123
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
Audit category:
4
audit script error
3
inconsistent ontology term
BIOSAMPLE
ASSAY
343 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
total RNA-seq
Hi-C
MPRA
tissue
liver
20
20
islet of Langerhans
18
6
lung
9
10
ascending aorta
16
thoracic aorta
16
+ See 10 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
kidney epithelial cell
5
pancreatic acinar cell
4
1
cell line
MIN6
1
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