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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
6
RRBS
4
DNase-seq
3
WGBS
1
ATAC-seq
Assay category
152
DNA binding
9
DNA methylation
5
DNA accessibility
Target of assay
101
histone modification
100
histone
57
broad histone mark
42
narrow histone mark
28
transcription factor
23
control
6
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
341
May, 2020
338
May, 2021
314
August, 2021
297
February, 2021
295
October, 2019
213
June, 2019
166
August, 2017
148
February, 2023
118
May, 2019
96
May, 2022
94
December, 2017
90
July, 2019
80
April, 2019
80
November, 2018
49
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
22
February, 2020
19
April, 2020
17
October, 2017
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
7
January, 2018
6
November, 2020
5
March, 2023
5
November, 2019
2
June, 2018
1
October, 2022
1
September, 2018
Available data
101
fastq
97
bam
96
bigWig
90
bed narrowPeak
61
tagAlign
28
bed broadPeak
23
bigBed narrowPeak
15
bigBed broadPeak
10
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
Organism
166
Homo sapiens
Biosample type
80
tissue
68
in vitro differentiated cells
18
primary cell
Organ
pancreas
125
connective tissue
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
166
AMP
Genome assembly (visualization)
102
hg19
81
GRCh38
Lab
166
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
May, 2023
organ_slims!
adipose tissue
pancreas
BIOSAMPLE
ASSAY
166 results
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Clear Filters
ChIP-seq
RRBS
DNase-seq
WGBS
ATAC-seq
tissue
liver
48
1
3
skeletal muscle tissue
22
4
right lobe of liver
1
1
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
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