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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
50
ChIP-seq
6
RRBS
4
ATAC-seq
4
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
89
Transcription
50
DNA binding
9
DNA accessibility
9
DNA methylation
Target of assay
130
histone modification
histone
69
broad histone mark
60
narrow histone mark
36
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
318
November, 2017
314
May, 2020
294
August, 2021
260
February, 2021
257
May, 2021
200
May, 2022
191
February, 2023
189
June, 2019
166
July, 2018
157
August, 2017
115
October, 2019
90
July, 2019
87
November, 2018
63
December, 2017
59
March, 2020
59
September, 2020
50
November, 2019
47
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
December, 2019
10
November, 2020
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
139
fastq
135
bam
112
bigWig
89
tsv
16
bed narrowPeak
10
bed bed3+
10
bigBed narrowPeak
8
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
3
bigBed broadPeak
Organism
156
Homo sapiens
Biosample type
136
tissue
21
primary cell
Organ
122
pancreas
connective tissue
25
adipose tissue
22
liver
15
epithelium
7
musculature of body
Project
157
AMP
Genome assembly (visualization)
117
hg19
108
GRCh38
Lab
157
AMP-T2D consortium
Audit category:
6
missing controlled_by
month_released!
December, 2019
March, 2023
organ_slims!
connective tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
157 results
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Clear Filters
total RNA-seq
ChIP-seq
RRBS
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
89
14
1
1
liver
16
1
3
skeletal muscle tissue
3
4
pancreas
2
right lobe of liver
1
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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