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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
199
DNA binding
15
DNA methylation
6
DNA accessibility
Target of assay
133
histone modification
132
histone
77
broad histone mark
54
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
chromatin remodeller
Date released
683
February, 2021
391
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
220
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
91
December, 2017
80
April, 2019
November, 2018
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
February, 2018
33
December, 2018
24
February, 2020
24
January, 2019
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
116
fastq
111
bam
110
bigWig
90
bed narrowPeak
69
tagAlign
28
bed broadPeak
24
bigBed narrowPeak
14
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
220
Homo sapiens
Biosample type
137
tissue
66
in vitro differentiated cells
17
primary cell
Organ
pancreas
123
connective tissue
57
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
220
AMP
Genome assembly (visualization)
114
hg19
94
GRCh38
Lab
220
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2018
November, 2018
organ_slims!
pancreas
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
220 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
65
1
primary cell
skeletal muscle myoblast
14
1
2
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