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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
89
DNA binding
89
Transcription
15
DNA methylation
11
DNA accessibility
Target of assay
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
314
May, 2020
298
August, 2021
281
November, 2017
254
May, 2021
205
February, 2023
204
August, 2017
200
May, 2022
195
June, 2019
168
July, 2018
118
October, 2019
July, 2019
67
November, 2018
61
March, 2020
59
December, 2017
59
September, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
October, 2018
33
December, 2018
25
February, 2020
23
February, 2018
23
May, 2019
19
April, 2020
17
January, 2019
16
April, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
176
fastq
171
bam
141
bigWig
89
tsv
27
bed narrowPeak
19
bed bed3+
11
tagAlign
10
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
2
bed broadPeak
2
bigBed broadPeak
Organism
203
Homo sapiens
Biosample type
158
tissue
27
in vitro differentiated cells
19
primary cell
Organ
120
pancreas
52
connective tissue
25
adipose tissue
21
liver
15
epithelium
7
musculature of body
Project
204
AMP
Genome assembly (visualization)
145
hg19
139
GRCh38
Lab
204
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
July, 2019
October, 2018
target.investigated_as!
RNA binding protein
histone modification
BIOSAMPLE
ASSAY
204 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
12
89
1
1
liver
15
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 4 more…
in vitro differentiated cells
adipocyte
26
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
1
1
2
pancreatic acinar cell
1
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