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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
89
total RNA-seq
4
ATAC-seq
3
WGBS
2
DNase-seq
1
FAIRE-seq
1
RRBS
Assay category
142
DNA binding
89
Transcription
7
DNA accessibility
4
DNA methylation
Target of assay
99
histone modification
98
histone
51
broad histone mark
47
narrow histone mark
32
control
11
transcription factor
2
RNA binding protein
Date released
315
November, 2017
242
August, 2017
194
May, 2020
157
July, 2018
144
May, 2022
September, 2018
63
December, 2017
61
May, 2021
60
November, 2018
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
39
August, 2021
35
February, 2021
25
October, 2019
19
September, 2020
17
March, 2020
16
July, 2019
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
6
June, 2019
5
December, 2019
5
January, 2019
5
March, 2019
5
October, 2017
3
August, 2018
3
October, 2022
2
February, 2020
2
May, 2019
1
August, 2022
1
December, 2018
1
June, 2018
Available data
196
fastq
194
bam
177
bigWig
89
tsv
67
bed narrowPeak
36
tagAlign
23
bigBed narrowPeak
22
bed bed3+
12
bed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
235
Homo sapiens
Biosample type
201
tissue
41
primary cell
Organ
188
pancreas
125
connective tissue
57
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
242
AMP
Genome assembly (visualization)
179
hg19
171
GRCh38
Lab
242
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
September, 2018
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
242 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
pancreas
14
right lobe of liver
1
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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